BouvetJacobiBernier2007

Reference

Bouvet, G.F., Jacobi, V., Bernier, L. (2007) Characterization of three DNA transposons in the Dutch elm disease fungi and evidence of repeat-induced point (RIP) mutations. Fungal Genetics and Biology, 44(5):430-443.

Abstract

Transposable elements (TEs) are fundamental components of eukaryotic genomes and can contribute in various ways to genome plasticity and evolution. We describe here the first three DNA transposons in the Dutch elm disease (DED) pathogens Ophiostoma ulmi and O. novo-ulmi, named OPHIO1, OPHIO2 and OPHIO3. We demonstrate that OPHIO transposons, which show high homology to Fot1/pogo TEs within the Tc1/mariner superfamily, have different distribution patterns and specificity in the DED fungi and that interspecific hybrids could act as genetic bridges for transmission of TEs between closely related fungal species. OPHIO3 was found to have undergone repeat-induced point mutations (RIP). We have also developed a complementary method to Margolin's ratios based on the computation of cumulative transition scores (CTS) in order to visualize rapidly RIP signatures on individual DNA strands of OPHIO transposons and TEs found in other ascomycete fungi.

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@ARTICLE { BouvetJacobiBernier2007,
    AUTHOR = { Bouvet, G.F. and Jacobi, V. and Bernier, L. },
    TITLE = { Characterization of three DNA transposons in the Dutch elm disease fungi and evidence of repeat-induced point (RIP) mutations },
    JOURNAL = { Fungal Genetics and Biology },
    YEAR = { 2007 },
    VOLUME = { 44 },
    PAGES = { 430-443 },
    NUMBER = { 5 },
    ABSTRACT = { Transposable elements (TEs) are fundamental components of eukaryotic genomes and can contribute in various ways to genome plasticity and evolution. We describe here the first three DNA transposons in the Dutch elm disease (DED) pathogens Ophiostoma ulmi and O. novo-ulmi, named OPHIO1, OPHIO2 and OPHIO3. We demonstrate that OPHIO transposons, which show high homology to Fot1/pogo TEs within the Tc1/mariner superfamily, have different distribution patterns and specificity in the DED fungi and that interspecific hybrids could act as genetic bridges for transmission of TEs between closely related fungal species. OPHIO3 was found to have undergone repeat-induced point mutations (RIP). We have also developed a complementary method to Margolin's ratios based on the computation of cumulative transition scores (CTS) in order to visualize rapidly RIP signatures on individual DNA strands of OPHIO transposons and TEs found in other ascomycete fungi. },
    KEYWORDS = { Ophiostoma novo-ulmi O. ulmi DNA transposon Interspecific hybrids Genetic bridge Repeat-induced point mutation (RIP) Cumulative transition score (CTS) },
    OWNER = { brugerolles },
    TIMESTAMP = { 2007.12.05 },
}

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